PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g044500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 460aa    MW: 51475 Da    PI: 8.2791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g044500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12155201455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A+++Ik+Lq
  Csa16g044500.1 155 DHILAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDAIKHIKYLQ 201
                     5899***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.535151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-18155218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10155201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-17156220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.41E-12156205No hitNo description
SMARTSM003533.4E-15157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.031267332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-7308341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-5309345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MATTKNVFST RWTSELDIEE YSIIHQYHMN SLAGDVPQSF SSLDDTTTCF NFDASCNNDL  60
VEEIPSKILK TTHISPKIHP FPSSINTPPS KHQPSSRILS FEKTGLKVMD HNSPNLIFSP  120
KEEEIELQDQ RKSKLIIRGT KRAQTLTRSQ SNAQDHILAE RKRREKLTQR FVALSALVPG  180
LKKMDKASVL GDAIKHIKYL QEKVKEYEEQ KQERTMESMV LVKKSQLVLD ENHQSSSSSS  240
DGNRGCSSSN LPEIEVRVSG KDVLIKILCE KQKGNLIKIM GEIEKLGLLI TNSNVLPFGP  300
TFDISIIAQM DKASVLGDAI KHIKYLQEKV KEYEEQKQER TMESMVLVKK SQLVLDENHQ  360
SSSSSSDGNR GCSSSNLPEI EVRVSGKDVL IKILCEKQKG NLIKIMGEIE KLGLLITNSN  420
VLPFGPTFDI SIIAQKNSNF DMKIEDVVKN LSCGLSKLT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164ERKRRE
2160165RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885620.0AF488562.1 Arabidopsis thaliana clone bHLH018 putative bHLH transcription factor mRNA, complete cds.
GenBankDQ4465490.0DQ446549.1 Arabidopsis thaliana clone pENTR221-At2g22750 basic helix-loop-helix family protein (At2g22750) mRNA, complete cds.
GenBankDQ6530150.0DQ653015.1 Arabidopsis thaliana clone 0000017319_0000012121 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472271.10.0PREDICTED: transcription factor bHLH18
SwissprotQ1PF171e-148BH018_ARATH; Transcription factor bHLH18
TrEMBLA0A078DJZ11e-177A0A078DJZ1_BRANA; BnaC04g35300D protein
STRINGBra030210.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.11e-145bHLH family protein